PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G012600.1.p
Common NameLOC101752639, SETIT_009863mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 516aa    MW: 53032.3 Da    PI: 10.1623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G012600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-06238260223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          Cp Cg++F+  ++L++H+   H
  Seita.7G012600.1.p 238 ACPQCGEVFTKADSLEHHQAIrH 260
                         6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280237260IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494237265IPR007087Zinc finger, C2H2
SuperFamilySSF563991.63E-15262344No hitNo description
SuperFamilySSF563991.63E-15398512No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MALASLLLPS SSASTASKAA GDRADSRRHD HHHHGSKRKK KPPPPSPQPS LSSAPRTPPG  60
ARSQRGMAVS ASSSKKSPKV AAAAAAKNRP QYQQHRVQST KKATATAASS SSSSWEQVKS  120
LLSCRSATAA ARVHDPAAPS ALARLRGSGA GACGASLCAM RDVVDAASSA AASASADRDT  180
APLNRRRAHR AGSSSSSSAA AGGGSHSSLR GLSGCYECRA INVEPMSRRY PRPRELCACP  240
QCGEVFTKAD SLEHHQAIRH AVSELGPEDS GRNIVEIIFK SSWQKRDRPI CHIDRILKVH  300
NAPRTVARFE AYRDAVRSRC RATAARAAAD GNELLRFHSA PLACALGLSG ATSLCAGAAA  360
DPSSIRSSNA AAVDTASSSS SPAAAPPATA AAAACCGVCT AIRHGFAPWV GAHQLGVRTT  420
ASSGRAHDCG GSESVQAAAN SNNGGCRAML VCRVIAGRVR RDGDATSAAG EEGPFDSVAG  480
EDAASSSVYG NLEELFVANP RAILPCFVVI YRVLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G012600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856070.0BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702667.10.0uncharacterized protein LOC101752639
TrEMBLK3Y6M20.0K3Y6M2_SETIT; Uncharacterized protein
STRINGSi009863m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-76C2H2-like zinc finger protein