PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G008200.1.p | ||||||||
Common Name | SETIT_012600mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GeBP | ||||||||
Protein Properties | Length: 258aa MW: 27601.6 Da PI: 6.314 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 44.5 | 4.2e-14 | 44 | 139 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 f r+wse De+ +L Gl ++a++g+ p ++a ++ +++++ +++ eK+rrL+ K+ + ++ e + ++ +el Seita.7G008200.1.p 44 FVRVWSEADEVRILEGLAAYAADHGAPPARsQLHAAL-EGRSLDKAEFTVTEIYEKVRRLRTKYCNLRDAgGPPVPEGGEDGGDEVRKYEL 133 89***********************988773444444.4566778999******************9999544455555667778889*** PP DUF573 92 skkiWg 97 sk iWg Seita.7G008200.1.p 134 SKAIWG 139 *****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.6E-18 | 44 | 139 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MNRPPHSSRT ADLVSPAADA AVEEAPMAAS KPAAGVRKKP SVAFVRVWSE ADEVRILEGL 60 AAYAADHGAP PARSQLHAAL EGRSLDKAEF TVTEIYEKVR RLRTKYCNLR DAGGPPVPEG 120 GEDGGDEVRK YELSKAIWGD QPANVAKKGG STSAAAVAVL PKAGGAIPRV RRGLEELQGL 180 FPCLAAEVEK VTNDEMLAPV LKRAFEFIDD QKAGELDDKV KKQMVKEAQV TMSGATLRDE 240 VLKMLIRSME IDMASVV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G008200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974990.1 | 0.0 | probable transcription factor At1g61730 | ||||
TrEMBL | A0A368RQY1 | 0.0 | A0A368RQY1_SETIT; Uncharacterized protein | ||||
STRING | Si012600m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14621 | 9 | 9 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G008200.1.p |