PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G236100.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HSF

Protein Properties

Length: 416aa MW: 43252.9 Da PI: 5.4447

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G236100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.3	3.4e-35	45	136	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+k+ Seita.6G236100.1.p 45 FLTKTYQLVDDPAVDDVISWNDDGSAFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKR 126 9***************************************************************99.........********** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i+r+k Seita.6G236100.1.p 127 LLCDIHRRKV 136 *****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.6E-38	37	129	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-59	41	134	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.9E-35	42	134	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.0E-31	45	134	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-20	45	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-20	83	95	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	84	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-20	96	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MAAEQAAAAA ATGGEPPPAT PQPADGVAPS AAAGAAVQRS VPTPFLTKTY QLVDDPAVDD 60 VISWNDDGSA FVVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF 120 RRGEKRLLCD IHRRKVTPAA AATGAVTVAA AAAIPIALPV GSPVYSGEEQ VLSSSSSPEP 180 PPLQPQAPSG SGSGGTAASG GGDVGEENDR LRRENARLAR ELGQMKKLCN NILLLMSKYA 240 ATQQLDTAAQ QVEAAKAAAA AAGNCSGESS EAAATPPLLP SVLELLPSCR GAPAPAAAEP 300 TEAAGTEHGD DDGSKAGARL FGVSIGRKRA RDESCNGDDG GVEDPVSRGA AEVKAEPVDA 360 PPDHHHHQQQ EFKDHATEPP QAWPIYRPRP VYHPLRACNG SAGSAGSDHD GSNSR*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MAAEQAAAAA ATGGEPPPAT PQPADGVAPS AAAGAAVQRS VPTPFLTKTY QLVDDPAVDD  60
VISWNDDGSA FVVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF  120
RRGEKRLLCD IHRRKVTPAA AATGAVTVAA AAAIPIALPV GSPVYSGEEQ VLSSSSSPEP  180
PPLQPQAPSG SGSGGTAASG GGDVGEENDR LRRENARLAR ELGQMKKLCN NILLLMSKYA  240
ATQQLDTAAQ QVEAAKAAAA AAGNCSGESS EAAATPPLLP SVLELLPSCR GAPAPAAAEP  300
TEAAGTEHGD DDGSKAGARL FGVSIGRKRA RDESCNGDDG GVEDPVSRGA AEVKAEPVDA  360
PPDHHHHQQQ EFKDHATEPP QAWPIYRPRP VYHPLRACNG SAGSAGSDHD GSNSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdg_A	1e-26	41	137	7	112	Heat shock factor protein 1
5hdn_A	1e-26	41	137	7	112	Heat shock factor protein 1
5hdn_B	1e-26	41	137	7	112	Heat shock factor protein 1
5hdn_C	1e-26	41	137	7	112	Heat shock factor protein 1
5hdn_D	1e-26	41	137	7	112	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G236100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU965033	0.0	EU965033.1 Zea mays clone 283366 heat shock factor protein 7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974114.1	0.0	heat stress transcription factor B-2b-like
Swissprot	Q6Z9C8	1e-146	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A368RPL8	0.0	A0A368RPL8_SETIT; Uncharacterized protein
STRING	Pavir.Fb02392.1.p	1e-180	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	5e-57	HSF family protein

Link Out ? help Back to Top
Phytozome	Seita.6G236100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]