PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G234300.1.p
Common NameLOC101762898, SETIT_015513mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 276aa    MW: 29038.7 Da    PI: 6.5044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G234300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-12110155454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Seita.6G234300.1.p 110 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 155
                         799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.919106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-15108170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-12110160No hitNo description
Gene3DG3DSA:4.10.280.106.7E-15110169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9110155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-11112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MQQHGVMDEL VSPASFCSPA SPPSFFNAAG HHSVLEFVSC GLPEQCWLMG DEALDDKTMH  60
DGAEWVSGGS HLAGSDLSAG NPHAAAAMCE PSARRRGRKP GSRSDGPTIS HVEAERQRRE  120
KLNRRFCDLR AAVPTVSRMD KASLLADAAA YIAELRGRVE QLEDAARQAA ARKQGGGNPA  180
ACPASGDLEE KVEVRMVGRE AAAVRLTTAA ARHAPARLMG ALRSLDLPVQ HACVSRVGGA  240
ATVQDAVVDV PAALQDEGCL RAALLHVLQQ QDESA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-17109168766Transcription factor MYC2
5gnj_B6e-17109168766Transcription factor MYC2
5gnj_E6e-17109168766Transcription factor MYC2
5gnj_F6e-17109168766Transcription factor MYC2
5gnj_G6e-17109168766Transcription factor MYC2
5gnj_I6e-17109168766Transcription factor MYC2
5gnj_M6e-17109168766Transcription factor MYC2
5gnj_N6e-17109168766Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G234300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974086.20.0transcription factor MYC2
TrEMBLA0A368RQ190.0A0A368RQ19_SETIT; Uncharacterized protein
STRINGSi015513m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.11e-18bHLH family protein