PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G234200.1.p
Common NameLOC101763309, SETIT_015024mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 269aa    MW: 28618.4 Da    PI: 7.2224
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G234200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12104149454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RRd++N +f eLr  +P+       +++ a+ L  A  YI +L
  Seita.6G234200.1.p 104 SHVEAERQRRDKLNRRFCELRAAVPTV-----SRMDRASLLADAAAYIAEL 149
                         799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.43100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-14103158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-14104159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-11104154No hitNo description
PfamPF000102.5E-9104149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDELACPSSS CSPPHSPASL FSFAGGHHPV VLEFESCDVP EQWLEDDGEG LQETLWANGA  60
VWRDGASPPS AGKNMSGNPT PPPAPTKRRR GWKPGPRTNG PVISHVEAER QRRDKLNRRF  120
CELRAAVPTV SRMDRASLLA DAAAYIAELR GRVQHQLEAE SKKASAAVTT VTAAAHSFAG  180
GGLAVEEDLE VRMLGREAAV LRLTSAARHA PERLMVALRS LDLPVQHAYV CRVGGMMTVK  240
DAVVDVPAAL GEEGRLRAAL LQSLQGGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-16103163764Transcription factor MYC2
5gnj_B3e-16103163764Transcription factor MYC2
5gnj_E3e-16103163764Transcription factor MYC2
5gnj_F3e-16103163764Transcription factor MYC2
5gnj_G3e-16103163764Transcription factor MYC2
5gnj_I3e-16103163764Transcription factor MYC2
5gnj_M3e-16103163764Transcription factor MYC2
5gnj_N3e-16103163764Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G234200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974087.10.0transcription factor MYC2
TrEMBLK3YLA10.0K3YLA1_SETIT; Uncharacterized protein
STRINGSi015024m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.14e-18bHLH family protein