PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G233900.2.p | ||||||||
Common Name | LOC101764517, SETIT_015072mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 28290.9 Da PI: 5.864 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 5.9e-13 | 96 | 141 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRdr+N +f eLr +P+ + +Ka+ L A YI +L Seita.6G233900.2.p 96 SHVEAERQRRDRLNRRFCELRAAVPTV-----SRFDKASLLSDAATYITQL 141 799***********************6.....49***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.913 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-16 | 95 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-15 | 96 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-10 | 96 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-11 | 98 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDELVCPASS SSSPSSASFF STAGHHQELE FMPCDVLEGL LGDEDWIDEA PDGVTLGYEG 60 SSARSPGNDL PGEPPAPEPK RRGRRPGPRS DAPVLSHVEA ERQRRDRLNR RFCELRAAVP 120 TVSRFDKASL LSDAATYITQ LRDRVKQLEA ETRRAAMTSA AAAAPAMAAT SSLGVQAEEL 180 ELEVRMVGGE AAALRLTTAV RHRHAPARFM LALRSLDLPV QHACVCLVGG ATVQDAVVDV 240 PAGLRDEHGL RAALLHMLQQ TGW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-17 | 95 | 152 | 7 | 64 | Transcription factor MYC2 |
5gnj_B | 5e-17 | 95 | 152 | 7 | 64 | Transcription factor MYC2 |
5gnj_E | 5e-17 | 95 | 152 | 7 | 64 | Transcription factor MYC2 |
5gnj_F | 5e-17 | 95 | 152 | 7 | 64 | Transcription factor MYC2 |
5gnj_G | 5e-17 | 95 | 152 | 7 | 64 | Transcription factor MYC2 |
5gnj_I | 5e-17 | 95 | 152 | 7 | 64 | Transcription factor MYC2 |
5gnj_M | 5e-17 | 95 | 152 | 7 | 64 | Transcription factor MYC2 |
5gnj_N | 5e-17 | 95 | 152 | 7 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 106 | RQRRDR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G233900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974090.1 | 0.0 | transcription factor bHLH14 | ||||
TrEMBL | K3YLE9 | 0.0 | K3YLE9_SETIT; Uncharacterized protein | ||||
STRING | Si015072m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 1e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G233900.2.p |
Entrez Gene | 101764517 |