PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G233900.1.p
Common NameLOC101764517, SETIT_015072mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 264aa    MW: 28290.9 Da    PI: 5.864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G233900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.25.9e-1396141454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RRdr+N +f eLr  +P+       + +Ka+ L  A  YI +L
  Seita.6G233900.1.p  96 SHVEAERQRRDRLNRRFCELRAAVPTV-----SRFDKASLLSDAATYITQL 141
                         799***********************6.....49***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.91392141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1695159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1596155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-1096141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-1198147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDELVCPASS SSSPSSASFF STAGHHQELE FMPCDVLEGL LGDEDWIDEA PDGVTLGYEG  60
SSARSPGNDL PGEPPAPEPK RRGRRPGPRS DAPVLSHVEA ERQRRDRLNR RFCELRAAVP  120
TVSRFDKASL LSDAATYITQ LRDRVKQLEA ETRRAAMTSA AAAAPAMAAT SSLGVQAEEL  180
ELEVRMVGGE AAALRLTTAV RHRHAPARFM LALRSLDLPV QHACVCLVGG ATVQDAVVDV  240
PAGLRDEHGL RAALLHMLQQ TGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1795152764Transcription factor MYC2
5gnj_B5e-1795152764Transcription factor MYC2
5gnj_E5e-1795152764Transcription factor MYC2
5gnj_F5e-1795152764Transcription factor MYC2
5gnj_G5e-1795152764Transcription factor MYC2
5gnj_I5e-1795152764Transcription factor MYC2
5gnj_M5e-1795152764Transcription factor MYC2
5gnj_N5e-1795152764Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106RQRRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G233900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974090.10.0transcription factor bHLH14
TrEMBLK3YLE90.0K3YLE9_SETIT; Uncharacterized protein
STRINGSi015072m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-24bHLH family protein