PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G233800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 235aa    MW: 24637.7 Da    PI: 6.6739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G233800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.7e-0986131454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h  +Er+ Rd+    f eLr  +P+       +++Ka+iL  A+ YI +L
  Seita.6G233800.1.p  86 SHVDAERQGRDKFHRLFCELRAAVPTV-----SRMDKASILADATAYIAEL 131
                         7999**********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.44682131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1282146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-686131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.65E-986136No hitNo description
Gene3DG3DSA:4.10.280.102.3E-1186143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-688137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDGPPSPAAS FSTAGHNQVL QFAPREVLGQ WWPGDPGLHE PLGGAATGDG GSSSVGNDVF  60
WSSPAPAAKR RGRKPGPPQT DEPAISHVDA ERQGRDKFHR LFCELRAAVP TVSRMDKASI  120
LADATAYIAE LRGSVEQLEA KARDAVARHG APPSAPAMTT ASHSFSSLED EGKLEVRMVG  180
PEAAARHAPA RLMDALLSLD LPVRHACICR VGGVTVQDAV VDVHRALLDC HGIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G233800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683541.11e-166transcription factor MYC2-like
TrEMBLA0A368RPV71e-168A0A368RPV7_SETIT; Uncharacterized protein
STRINGSi015213m2e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-25bHLH family protein