PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G233700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 304aa    MW: 32616.5 Da    PI: 11.5123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G233700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.6e-11141185554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h e Er RRd++  +f eLr  +P+       +++Ka+iL  A+ YI +L
  Seita.6G233700.1.p 141 HVEDERHRRDKLHRRFCELRAAVPNV-----SRMDKASILADATAYITEL 185
                         7889*********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.38136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-15140207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-8140190No hitNo description
Gene3DG3DSA:4.10.280.108.7E-14141200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8141185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MPSKSKCCDV ATCRCYRLDL SLPPAPEPPA TARSAIFSTV QWMGSSSPPP PAALPPRPPS  60
PPPATTRRSS SPHARSWGKG GPVTSGCMSP WMARRGATGA RPRWVTITTR PSWNSPAPAA  120
KTTTRGRKAG PARPDEPAIP HVEDERHRRD KLHRRFCELR AAVPNVSRMD KASILADATA  180
YITELRGRVE QLEAMAREAA ARQGAPSAAS HSFRNLEAEK LEVRMVGPKA AALRLTTAAA  240
RHRHAPARLM DALRSLDLPV RHACICRVAG VTVQDAVVDV PAAALRDEGG LRAVLLHRLQ  300
VSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-16136194462Transcription factor MYC2
5gnj_B9e-16136194462Transcription factor MYC2
5gnj_E9e-16136194462Transcription factor MYC2
5gnj_F9e-16136194462Transcription factor MYC2
5gnj_G9e-16136194462Transcription factor MYC2
5gnj_I9e-16136194462Transcription factor MYC2
5gnj_M9e-16136194462Transcription factor MYC2
5gnj_N9e-16136194462Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G233700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702440.21e-131LOW QUALITY PROTEIN: transcription factor MYC2
TrEMBLA0A368RPJ10.0A0A368RPJ1_SETIT; Uncharacterized protein
STRINGSi015213m1e-122(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.18e-19bHLH family protein