PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G232500.4.p

Common Name

SETIT_014861mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 345aa MW: 37811.2 Da PI: 7.6487

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G232500.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.6	1e-11	24	52	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le Seita.6G232500.4.p 24 KTVRRLAQNREAARKSRLRKKAYIQQLES 52 5679***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.1E-5	20	95	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.864	22	66	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-8	22	64	No hit	No description
SuperFamily	SSF57959	2.25E-7	24	57	No hit	No description
Pfam	PF00170	1.9E-8	24	53	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	27	42	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.6E-28	104	177	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MCLLGMQDMA TGSTPKTGKA LDPKTVRRLA QNREAARKSR LRKKAYIQQL ESSKLKLAQM 60 EQDVQRARSQ GLFLGGGPGA NTSSGAAMFD VGYARWLDDH GRRMAELQGA LHAHLPDGDL 120 RAIVDDTLTH HDELFQLKVV AAKSDVSHLI TGAWTTPAER CFLWMGGFRP SDLLKTLLPQ 180 LDPLTEQQVV GICNLQRSSQ EAEEALSQGL EQLHQSLADT MAGGSLIDDI NMSFMGQMAL 240 ALGKLANLEG FVIQADNLRQ QALHQMHRIL TVRQAARCFL AIGEYHNRLR ALSSLWASRP 300 REMLVADEGN CGEISVATQP SQSQFSSLLT HAVELTFSLG AREK*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MCLLGMQDMA TGSTPKTGKA LDPKTVRRLA QNREAARKSR LRKKAYIQQL ESSKLKLAQM  60
EQDVQRARSQ GLFLGGGPGA NTSSGAAMFD VGYARWLDDH GRRMAELQGA LHAHLPDGDL  120
RAIVDDTLTH HDELFQLKVV AAKSDVSHLI TGAWTTPAER CFLWMGGFRP SDLLKTLLPQ  180
LDPLTEQQVV GICNLQRSSQ EAEEALSQGL EQLHQSLADT MAGGSLIDDI NMSFMGQMAL  240
ALGKLANLEG FVIQADNLRQ QALHQMHRIL TVRQAARCFL AIGEYHNRLR ALSSLWASRP  300
REMLVADEGN CGEISVATQP SQSQFSSLLT HAVELTFSLG AREK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G232500.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683425.1	0.0	transcription factor TGAL4-like isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A368RPN0	0.0	A0A368RPN0_SETIT; Uncharacterized protein
STRING	Si014861m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-140	bZIP family protein

Link Out ? help Back to Top
Phytozome	Seita.6G232500.4.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]