PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G232500.2.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 348aa MW: 38213.4 Da PI: 8.064

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G232500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.6	1e-11	77	105	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le Seita.6G232500.2.p 77 KTVRRLAQNREAARKSRLRKKAYIQQLES 105 5679***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.1E-5	73	148	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.1E-8	75	117	No hit	No description
PROSITE profile	PS50217	8.864	75	119	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-8	77	106	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.25E-7	77	110	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.6E-28	157	230	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MTMRSVHTPK EGSNLTVDNT DDSKSSSKNT NNHSSDHQLG AAAANMASQF DQVPQQIQHK 60 DMATGSTPKT GKALDPKTVR RLAQNREAAR KSRLRKKAYI QQLESSKLKL AQMEQDVQRA 120 RSQGLFLGGG PGANTSSGAA MFDVGYARWL DDHGRRMAEL QGALHAHLPD GDLRAIVDDT 180 LTHHDELFQL KVVAAKSDVS HLITGAWTTP AERCFLWMGG FRPSDLLKTL LPQLDPLTEQ 240 QVVGICNLQR SSQEAEEALS QGLEQLHQSL ADTMAGGSLI DDINMSFMGQ MALALGKLAN 300 LEGFVIQADN LRQQALHQMH RILTVRQAAR CFLAIGCWWQ MKAIVER*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MTMRSVHTPK EGSNLTVDNT DDSKSSSKNT NNHSSDHQLG AAAANMASQF DQVPQQIQHK  60
DMATGSTPKT GKALDPKTVR RLAQNREAAR KSRLRKKAYI QQLESSKLKL AQMEQDVQRA  120
RSQGLFLGGG PGANTSSGAA MFDVGYARWL DDHGRRMAEL QGALHAHLPD GDLRAIVDDT  180
LTHHDELFQL KVVAAKSDVS HLITGAWTTP AERCFLWMGG FRPSDLLKTL LPQLDPLTEQ  240
QVVGICNLQR SSQEAEEALS QGLEQLHQSL ADTMAGGSLI DDINMSFMGQ MALALGKLAN  300
LEGFVIQADN LRQQALHQMH RILTVRQAAR CFLAIGCWWQ MKAIVER*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G232500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683426.1	0.0	transcription factor TGAL4-like isoform X2
Swissprot	Q53Q70	1e-180	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A368RPQ4	0.0	A0A368RPQ4_SETIT; Uncharacterized protein
STRING	Si014861m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-124	bZIP family protein

Link Out ? help Back to Top
Phytozome	Seita.6G232500.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]