PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G227100.1.p | ||||||||
Common Name | SETIT_013986mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 360aa MW: 38289.2 Da PI: 12.2257 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.2 | 6.5e-21 | 161 | 211 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a++ a+++++g Seita.6G227100.1.p 161 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDDAALRFKG 211 68********.**********64....55************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.84E-19 | 161 | 221 | No hit | No description |
Pfam | PF00847 | 7.8E-14 | 161 | 211 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.317 | 162 | 219 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 162 | 219 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-33 | 162 | 219 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-35 | 162 | 225 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-12 | 163 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-12 | 185 | 201 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGLVASLASL LSPPPRRERQ AWIVPEKAPP PPPPPPTVAR GRRAMPIQTR QAVACGGPGC 60 CGRRRSAPSS SPRSRTSSAP GGGLLRHRPR RTTASARRRR SRRRPCWGTT SFSKQSDGWI 120 WITGCDRNRP TLIARAISVM RQQAAAAPAT AASSELPPPP PRYRGVRQRP WGKWAAEIRD 180 PVKAARVWLG TFDTAEDAAR AYDDAALRFK GAKAKLNFPP VAFRRPHQAG HQHAGGVFVA 240 APGHHHHHHA AAQLLHRQQS AGASSTSSTR RHPGPVHHLQ SAAPGATAAT SLAGSAARAH 300 QEEFPDLSRY AHILQSGDLD LLAVAGGGLT PGQSSSTTTA SSSLTAPPEE LPPRREQAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 163 | 219 | 6 | 63 | ATERF1 |
3gcc_A | 1e-22 | 163 | 219 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 19 | PPPRRERQ |
2 | 89 | 104 | RRTTASARRRRSRRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G227100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093996 | 7e-72 | FP093996.1 Phyllostachys edulis cDNA clone: bphyem120j10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683058.1 | 1e-151 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | K3YIB7 | 0.0 | K3YIB7_SETIT; Uncharacterized protein | ||||
STRING | Si013986m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25645 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 3e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G227100.1.p |