PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G223300.1.p
Common NameLOC101762082, SETIT_013747mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 445aa    MW: 46053.2 Da    PI: 7.9097
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G223300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.62.7e-41121197278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C vegC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l efD++krsCr+rL++hn+rrrk+q+
  Seita.6G223300.1.p 121 CAVEGCTADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDDTKRSCRKRLDGHNRRRRKPQP 197
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.8E-34113182IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.043118195IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.89E-39119200IPR004333Transcription factor, SBP-box
PfamPF031104.5E-31121194IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDWDLKAPGA WDLAELEHDH AGGAAAAAVG PSGGHGNAAA TAYRPPGAAE CSVDLKLGGL  60
GECELGAAPS SRERAAAAGK APVAPAAGSS SPGPGAPAKR PRPGGGAGPQ HHHHQQQCPS  120
CAVEGCTADL SKCRDYHRRH KVCEAHSKTP VVVVAGREMR FCQQCSRFHL LAEFDDTKRS  180
CRKRLDGHNR RRRKPQPDTM ASASFMASQQ GTRFSPFAAP RLDANWPGVI KTEESPYYTH  240
HQIPLGTSNR QHFVGASSAY AKEGRRFPFL QEGEISFATG VVLEAPASAR QPVLKAAAPP  300
ESSSGSTGGK MFSDGLTRVL DSDCALSLLS APANSSGIDV SRMVRPTEHV PMAQPVVSGL  360
QFGSSSWFSR PQASAGGAAV AATAGFPSCP VVEGEHPQLN TVLGSNDNEM NYGGMFHVGG  420
GGASGGGGEG SSDGTSSSLP FSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-261211941184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198102KRPRP
2177194KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtSBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G223300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5607700.0JN560770.1 Setaria italica teosinte glume architecture 1 (TGA1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974002.10.0teosinte glume architecture 1
SwissprotQ49I570.0TGA1B_MAIZE; Teosinte glume architecture 1
TrEMBLK3YHM90.0K3YHM9_SETIT; Uncharacterized protein
STRINGSi013747m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.15e-41SBP family protein
Publications ? help Back to Top
  1. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]