PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G217500.1.p | ||||||||
Common Name | LOC101769938, SETIT_013867mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 402aa MW: 42299 Da PI: 5.7827 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.5e-09 | 211 | 258 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Seita.6G217500.1.p 211 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 258 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-16 | 205 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.78E-10 | 205 | 262 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.7E-16 | 207 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.301 | 207 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-6 | 211 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-10 | 213 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MEGRAGGGRD YIASLLSSAP RLDFGALGAV PAMLDSAAAG ADGGEDCLER FCGDPGFAER 60 AARLSSFSGQ RFAGAAAAAA GLFGLPPPAP AASNGEFAGS REASSVSDPA SAMRDANAKK 120 RKAPAAAKGK GKEASAQAGE QKDPDAKRCK TEGAEGKDES PVKPKPEQAG SDSSVEDGGG 180 QKPGKGKNAK PVEPPKDYVH VRARRGQATD SHSLAERVRR ERISQRMKVL QDLVPGCNKV 240 IGKALMLDEI INYVQSLQRQ VEFLSMKLAT VNPLDFSNLP TLLQKDIFQA CGPSASSVFS 300 LESSSSGFPF SDQGDVFQSF VPNGLENQCG LNPLDLALSQ ATNAQYAFQD GTASTNLQQR 360 NFWEEDLQSV FHIDNGQSQE NGVSAQSFHG QLQAGHMKME F* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G217500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973933.1 | 0.0 | transcription factor bHLH78 | ||||
TrEMBL | K3YHZ8 | 0.0 | K3YHZ8_SETIT; Uncharacterized protein | ||||
STRING | Si013867m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G217500.1.p |
Entrez Gene | 101769938 |