PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G208600.1.p
Common NameLOC101756677, SETIT_013151mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 1119aa    MW: 122182 Da    PI: 6.9378
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G208600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.6e-40186263178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqv++C+adl++ak+yhrrhkvCe+hsk++++lv+ ++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+
  Seita.6G208600.1.p 186 MCQVDDCRADLTSAKDYHRRHKVCETHSKTTKALVASQMQRFCQQCSRFHPLAEFDEGKRSCRRRLAGHNRRRRKTQP 263
                         6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-33180248IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.838184261IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-37185264IPR004333Transcription factor, SBP-box
PfamPF031101.2E-29187260IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MQREVGPQVA PPLFVHQIQQ LPPHAAAAKK RGHPWPAAVA PAKAAAAAAA AGEGNWNPKM  60
WDWDSRTLTA RPSSDALRLG GGAQGQHHQQ QQQPAASAAA KVAEAHRRAG GSGALNLQLG  120
LREDAATPMD TSPSAPVPSS PSPPASAAAG QEPVVRPSKR VRSGSPGSAG GSGGAGAANG  180
GASYPMCQVD DCRADLTSAK DYHRRHKVCE THSKTTKALV ASQMQRFCQQ CSRFHPLAEF  240
DEGKRSCRRR LAGHNRRRRK TQPTDVASQL LLPGNQENAA NRTQDIVNLI TVIARLQGSN  300
VGKAPSIPQI PDKQNLVEII SKINSLNNTT SAPKSPPLEV VDLNASQDQQ EDSVQKTANG  360
IDKQTVPSTM DLLAVLSTGL ATSTPETNTS QSQGSSDSSG NNKSKSHSTE AATVVNSHDK  420
SIRAFPAADF MRSNSTHESQ PHAYKDADQG TQPYLSLQLF GSIEEDIPPK MDSANKYLSS  480
ESSNPLDERS PSSSPPITHK FFPIHSVDEE DRHPHDYGED AAMVEVSTSR AWVAPPLELF  540
KDSDRPIENG SPPNPGYQSC YASTSCSDHS PSTSNSDGQD RTGRIIFKLF GKEPGTIPGN  600
IRDEIVNWLK HSPTEMEGYI RPGCLVLSMY LSMPAIAWDE LEENLLQRVN TLVQNSDLDF  660
WSKGRFLVRT DSKLVSYNEG MTRLSKSWRT WNTPELTFVS PIAVIGGQKT SLVLKGRNLT  720
IPGTQIHCTS TGKYISKEVL CSAYPGTIYD DSGVETFDLP GEPDLILGRC FIEVENRFRG  780
NSFPVIVASS SVCQELRKLE AELEDSQFLD VSSDDQVQDP RQSKPRDQIL HFLNELGWLF  840
QRTAACTSST RSDVSDLDLI QFSTPRFKYL LLFSSERDWC SLTKTLLDIL AKRSLVSDEL  900
SQETMEMLAE VHLLNRAVKR KSSRMVHLLV KFVVICPDNS KVYPFVPNFP GPGGLTPLHL  960
AASIENAEDI VDVLTDDPQQ IGLNCWQSVL DDDGQSPETY AKLRNHNSYN ELVAQKLVDR  1020
KNSQVTIMVD KDEVGMDQSG NVGGVRALQI QSCSQCAILE SGVLRKPLRS RGLLARPYIH  1080
SMLAIAAVCV CVCVFMRALL RINSGRSFKW ERLDYGTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32177260184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G208600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973899.10.0squamosa promoter-binding-like protein 15
RefseqXP_012702492.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLK3YFY30.0K3YFY3_SETIT; Uncharacterized protein
STRINGSi013151m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14