PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G206100.1.p | ||||||||
Common Name | LOC101782059, SETIT_013408mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 636aa MW: 66073.3 Da PI: 9.9441 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.4 | 4.4e-10 | 23 | 72 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwq 45 W t+E++ll++av+++G+ +W+++a +++ ++t+ c+++++ Seita.6G206100.1.p 23 WGTWEELLLACAVRRHGTASWDSVAMEVQsrcpaaaaPRLTPTGCRLHFR 72 *****************************999999999999999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0032 | 19 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-9 | 23 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.80E-5 | 23 | 74 | No hit | No description |
Gene3D | G3DSA:1.20.920.10 | 1.3E-13 | 283 | 422 | IPR001487 | Bromodomain |
SMART | SM00297 | 2.2E-11 | 291 | 402 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 1.22E-14 | 295 | 398 | IPR001487 | Bromodomain |
Pfam | PF00439 | 2.2E-10 | 308 | 387 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 10.732 | 310 | 383 | IPR001487 | Bromodomain |
CDD | cd04369 | 8.59E-14 | 313 | 397 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MTARSDDPGV SPGTSAAAGG EIWGTWEELL LACAVRRHGT ASWDSVAMEV QSRCPAAAAP 60 RLTPTGCRLH FRLLHRRFAA GAGENGGGGD VDEDPDAAAA DGWVEELRKL RVAELRREVE 120 RYDLSIGSLQ SKVKRLKEER ERSISGEANL PAVKAEEGEE PAAGKGSLED DAGGGEDRVS 180 GGESGRSCKE SNSSDLKRPV HDAGTASAAV DGAAAAKEEG EEEEAAAGES LAVKREEVSG 240 ESVARSKETD KESSDVQSSA SPSRRREREG GGGAGVEEAE AEEASASTSA RAALPAAEAE 300 ALLAFLESVR TSKPGSVFER RLESQDDAKY RSTIRRHVDL ETVRSKLEGG GGACYSSASE 360 FYRDLLLLCT NALVFFPRGS PEHSAATRTR ALVSKHIPAS LRKDQPGTSG KAAAPASKKA 420 KAEADVGSLL EKTAPIIVCR KRSSIAKAAA AAAKEEKGEK GETDKEENEA SKKAGGTKDK 480 ARGLRTNKTR AAPVRKAAPN QKTEDNGSDS DAPAEGTKKP GKKGGSSAVG SGAGVAKKRN 540 AVNFLNRMKQ GSAPSTERVS LLETLKLSAA AEQKKAGKGS EGKKEPAGGS GSKRGRGTPP 600 GRRNIGRPPK RAAAPPSPPP AKRARGGGTK RGGRK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G206100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702097.1 | 0.0 | uncharacterized protein LOC101782059 | ||||
TrEMBL | K3YGP0 | 0.0 | K3YGP0_SETIT; Uncharacterized protein | ||||
STRING | Si013408m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3181 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 9e-20 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G206100.1.p |
Entrez Gene | 101782059 |