PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G205500.3.p | ||||||||
Common Name | LOC101773844, SETIT_013870mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | SBP | ||||||||
Protein Properties | Length: 401aa MW: 41398.6 Da PI: 8.6554 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.2 | 3.7e-41 | 91 | 166 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl+ ak+yh rhkvC +h+kap v+v+g+eqrfCqqCsrfh+l+efD++krsCrrrL +hnerrr++ Seita.6G205500.3.p 91 RCQVEGCNVDLTGAKTYHCRHKVCAMHAKAPLVVVNGIEQRFCQQCSRFHQLHEFDQQKRSCRRRLTGHNERRRRP 166 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-33 | 85 | 153 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.18 | 89 | 166 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-39 | 90 | 169 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-32 | 92 | 165 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MEAASAAGGS GGSGSGSGGG DDHLHGLKFG KKIYFEDAGG SGSSGSGGSA SASDAPPPQP 60 LPPPSASPGR APGRRSRGAA GGASGSPAPA RCQVEGCNVD LTGAKTYHCR HKVCAMHAKA 120 PLVVVNGIEQ RFCQQCSRFH QLHEFDQQKR SCRRRLTGHN ERRRRPPAGP LASRYGRLAT 180 SFGEPGRFRS FLLDFTYPRV PSSMRDGWPA ARPGERVPAS IQWQASLDPH QHSAITGYGA 240 HSYGSHGSSS SGPPVFPGPE LPPGGCLAGV PADSSCALSL LSTQQWDTTQ SAGHSRAASM 300 PATAGFDGNP VAPSLMASSY IAPSPWTGSR GHAGGRDVPP QLPPDLPLDE VHSGSSSHHG 360 QFSGELELAL QGNRPAPAPR IDHGSTSTFD QASNTTDWSL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-31 | 82 | 165 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00412 | DAP | Transfer from AT3G57920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G205500.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702111.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X2 | ||||
Swissprot | Q7EXZ2 | 1e-146 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | K3YI01 | 0.0 | K3YI01_SETIT; Uncharacterized protein | ||||
STRING | Si013870m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 3e-40 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G205500.3.p |
Entrez Gene | 101773844 |