PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G203400.1.p
Common NameLOC101771139, SETIT_013819mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 420aa    MW: 45225.7 Da    PI: 5.977
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G203400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05244263120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Seita.6G203400.1.p 244 FSCPVCYKTFNRYNNMQMHM 263
                         89*****************9 PP
2zf-C2H212.50.00044330350323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C +Cgk F  k + ++H +++
  Seita.6G203400.1.p 330 CRKCGKAFAVKGDWRTHEKNC 350
                         *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.67E-5240266No hitNo description
Gene3DG3DSA:3.30.160.607.5E-6244263IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743244271IPR007087Zinc finger, C2H2
SMARTSM003550.45244266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
SuperFamilySSF576673.58E-6312348No hitNo description
Gene3DG3DSA:3.30.160.603.5E-5315348IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621328348IPR007087Zinc finger, C2H2
SMARTSM0035582328348IPR015880Zinc finger, C2H2-like
SMARTSM00355220354377IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEDPYTSFFK NPYYYYTTSF PAAPAPHLPP PLPPYNAFYP GVAAAAPQYP ACFFQSQPTT  60
LPPLHDSPPS PPLREALPLL SQSPTRGHGA SRPHVAADSD DDDDADDFLR EVVVSSATHS  120
ARAPLFADLN CMPSCCDDGD PMDVEAAGAE STDDAAVALR IGLPAAPVNG CGGAEADLLS  180
GLSGRACGGM EPEEDEEECK VDTGAGDGDE VVPLGFASTP IGRLNKGQYW IPTPAQILIG  240
PTQFSCPVCY KTFNRYNNMQ MHMWGHGSQY RKGPESLRGV QPTAMLRLPC YCCAPGCRNN  300
IDHPRARPLK DFRTLQTHYK RKHGLKPFLC RKCGKAFAVK GDWRTHEKNC GKLWYCLCGS  360
EFKHKRSLKD HARAFGHGHG AFGCNIDGGA DGLDDDDEGA VSEIEQDCAA AAACGRSAR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G203400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969070.0FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973849.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-119ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLK3YHV00.0K3YHV0_SETIT; Uncharacterized protein
STRINGSi013819m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]