PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G194800.1.p | ||||||||
Common Name | SETIT_013985mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 345aa MW: 37434.8 Da PI: 4.3389 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.6 | 1.4e-27 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien++nrqvtfskRrng+ KKA+ELSvLCd++va+++fs++g+l +s Seita.6G194800.1.p 10 RIENTTNRQVTFSKRRNGLVKKAYELSVLCDIDVALLMFSPSGRLSHFS 58 8********************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.352 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-29 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.52E-37 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 9.3E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MGRVKLPIRR IENTTNRQVT FSKRRNGLVK KAYELSVLCD IDVALLMFSP SGRLSHFSGR 60 NGVEDVILRY MNLSEHDRGG AVQNREYLVS MLQRLKREGD MATQLANPGA LSERIKEIQR 120 EIYSSQQQLH ISEERLRLFE PDPAAFSSTS ELDGCEKLLA DLLDRVVQRK NYLLGEHMTP 180 FDPTASGMEG TNGAQMFTDQ QAAEGMGTFA GDAALWAAAD VGSDDPGHQM FGGSDPLIYL 240 SRDQDVYDAT SQADADADAW REEYTCTELL SGLIPATPFP LMPHWLVPDD EFLPMPDGGG 300 GGGGMVAAQE QVEASTASCS YVPSDDAGTP AAAYDSTTAP ANVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 7e-18 | 1 | 99 | 1 | 92 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-18 | 1 | 99 | 1 | 92 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-18 | 1 | 99 | 1 | 92 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-18 | 1 | 99 | 1 | 92 | Myocyte-specific enhancer factor 2B |
6c9l_A | 7e-18 | 1 | 99 | 1 | 92 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-18 | 1 | 99 | 1 | 92 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-18 | 1 | 99 | 1 | 92 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-18 | 1 | 99 | 1 | 92 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-18 | 1 | 99 | 1 | 92 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-18 | 1 | 99 | 1 | 92 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G194800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973793.1 | 0.0 | agamous-like MADS-box protein AGL66 isoform X4 | ||||
Swissprot | Q1PFC2 | 1e-68 | AGL66_ARATH; Agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A368RN57 | 0.0 | A0A368RN57_SETIT; Uncharacterized protein | ||||
STRING | Si013985m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4953 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 4e-70 | AGAMOUS-like 66 |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G194800.1.p |
Publications ? help Back to Top | |||
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