PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G191000.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 359aa    MW: 37525.7 Da    PI: 7.305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G191000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.3e-09190237455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Seita.6G191000.2.p 190 RHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 237
                         599***********************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17183253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-11184241No hitNo description
PROSITE profilePS5088815.478186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16189252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6190237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDSFAWATVS QTAGLGGGVS DGRGGGLLPP MPGFQLPPPA GLEHFSVDSG LVERAVRSSS  60
CFGAGNGTAP TASASNITLE GASGRRSKVA GGSSSVNGVH GEVATGDCSS GGPEPEKRSS  120
EDVLGTDQAN ASTGSANEGS GSKGVNGEKN GLAAATAAAG KRKRKGSKEP DEEGEGYIHV  180
RARKGQATNR HSLAERLRRE KISERMKLLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV  240
EFLSMKLAAV NPQLGLNIEG LLSKDLIRYP SAPSSAPIGF SVAQSGMVQE GVHSVASSNG  300
FRTVMQDQLN ERDSFREHVS QMPRAFDGWF HNAGQTAYRA VIDPEHLSIR PDQDGFHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G191000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702420.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A368RNI50.0A0A368RNI5_SETIT; Uncharacterized protein
STRINGPavir.Fb01828.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-53bHLH family protein