PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G191000.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 363aa MW: 37983.2 Da PI: 7.0203

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G191000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.3e-09	190	237	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Seita.6G191000.1.p 190 RHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 237 599*********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.15E-17	183	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.34E-11	184	241	No hit	No description
PROSITE profile	PS50888	15.478	186	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-16	189	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	190	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-11	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MDSFAWATVS QTAGLGGGVS DGRGGGLLPP MPGFQLPPPA GLEHFSVDSG LVERAVRSSS 60 CFGAGNGTAP TASASNITLE GASGRRSKVA GGSSSVNGVH GEVATGDCSS GGPEPEKRSS 120 EDVLGTDQAN ASTGSANEGS GSKGVNGEKN GLAAATAAAG KRKRKGSKEP DEEGEGYIHV 180 RARKGQATNR HSLAERLRRE KISERMKLLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV 240 EFLSMKLAAV NPQLGLNIEG LLSKDLIRYP SAPSSAPIGF SVAQSGMVQE GVHSVASSNG 300 FRTVMQDQLN ERDSFREHVS QSLEQMPRAF DGWFHNAGQT AYRAVIDPEH LSIRPDQDGF 360 HL*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MDSFAWATVS QTAGLGGGVS DGRGGGLLPP MPGFQLPPPA GLEHFSVDSG LVERAVRSSS  60
CFGAGNGTAP TASASNITLE GASGRRSKVA GGSSSVNGVH GEVATGDCSS GGPEPEKRSS  120
EDVLGTDQAN ASTGSANEGS GSKGVNGEKN GLAAATAAAG KRKRKGSKEP DEEGEGYIHV  180
RARKGQATNR HSLAERLRRE KISERMKLLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV  240
EFLSMKLAAV NPQLGLNIEG LLSKDLIRYP SAPSSAPIGF SVAQSGMVQE GVHSVASSNG  300
FRTVMQDQLN ERDSFREHVS QSLEQMPRAF DGWFHNAGQT AYRAVIDPEH LSIRPDQDGF  360
HL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G191000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973759.1	0.0	transcription factor bHLH49 isoform X1
TrEMBL	A0A368RNB2	0.0	A0A368RNB2_SETIT; Uncharacterized protein
STRING	Pavir.Fb01828.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	1e-53	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.6G191000.1.p