PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G188700.1.p
Common NameLOC101761664, SETIT_014062mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 332aa    MW: 36722.7 Da    PI: 5.1402
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G188700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.43.8e-1828114286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergfer.spkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                         W++ e+l+Li+a+ e++++l+rg+lk+++Weev++             ++r + +qC++k+e+l+kry+ ++++         s + +f++
  Seita.6G188700.1.p  28 WSDPETLHLIDAYDERWTALGRGQLKAQQWEEVAADTaarcaatPGLAVQRkTGTQCRHKLEKLRKRYRTEAARPVT------SLWTFFRR 112
                         ***********************************999999976555666659*****************9998875......58999999 PP

            trihelix  85 le 86 
                         ++
  Seita.6G188700.1.p 113 MD 114
                         98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-1726116No hitNo description
SMARTSM005951.2E-435121IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMAAGAHEDS DEPPRRSALK KSAPAQPWSD PETLHLIDAY DERWTALGRG QLKAQQWEEV  60
AADTAARCAA TPGLAVQRKT GTQCRHKLEK LRKRYRTEAA RPVTSLWTFF RRMDQLERGP  120
NAASSAYPAA GGSPPAAASD EEEEEEEDEE ENQEDEEEEE EELIPRNNTR SINGIIREFG  180
SGLAPRHPQL QLQQQQQPPP PPSITPSTAP PRKRVAYEAF QAKAAAAAAA AVAADKAKEE  240
EVELVRRRPS GPGGASAQLS AVLRDFSDGV MRLERRRMEM QWEIERGWQE TEARHAQMLQ  300
DAQRQLRDAI AAACSLPPKK ARRDYGSSGD S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G188700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973741.10.0trihelix transcription factor ASIL1
TrEMBLK3YIJ30.0K3YIJ3_SETIT; Uncharacterized protein
STRINGSi014062m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-21Trihelix family protein