PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G184600.1.p
Common NameSETIT_014356mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 241aa    MW: 25943.2 Da    PI: 9.4264
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G184600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-132369354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  Seita.6G184600.1.p 23 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 69
                        79*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-141473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-121870No hitNo description
Gene3DG3DSA:4.10.280.101.1E-141972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1962069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-112369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-122675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTEDGEEERR APAPASRKKE RGRSHSEAER KRRQRINAHL ATLRTLVPSA SRMDKAALLG  60
EVVRHVRELR GKASDAAKGV GAGVIPGEGD EVGVEEDDRW RPAGRHYGGV GGLGTDADDA  120
CDRRLRPPRR VRAWVCCADR PGLMTDLGRA VRSVGNARPV RAEIATVGGR TRGVLELDVC  180
CDDGDGDVVA AAATDRGNRA VAMSTLRTAL RAVLLDREEH LSAAEGYKRP RFSAQIAEVQ  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11632RKKERGRSHSEAERKRR
22833ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G184600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279684e-51KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683575.11e-167transcription factor bHLH30
TrEMBLK3YJD71e-166K3YJD7_SETIT; Uncharacterized protein
STRINGSi014356m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.13e-17basic helix-loop-helix 32