PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G176400.2.p | ||||||||
Common Name | LOC101754251, SETIT_014954mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 354aa MW: 36614.6 Da PI: 7.1552 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.8 | 2.4e-15 | 170 | 222 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ + + LAk+l+L rqV vWFqNrRa+ k Seita.6G176400.2.p 170 RKKLRLSKEQSAFLEESFKEHSTLNPK--AALAKQLNLRPRQVEVWFQNRRARTK 222 788899******************997..68**********************98 PP | |||||||
2 | HD-ZIP_I/II | 118.3 | 4.2e-38 | 170 | 258 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEesF+e+++L+p K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al+een+rL+ke +eLr +l Seita.6G176400.2.p 170 RKKLRLSKEQSAFLEESFKEHSTLNP--KAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALTEENRRLHKELAELR-AL 257 69***********************9..79*********************************************************9.66 PP HD-ZIP_I/II 92 k 92 k Seita.6G176400.2.p 258 K 258 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-15 | 152 | 222 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.85E-15 | 157 | 225 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.123 | 166 | 224 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-12 | 168 | 228 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.19E-15 | 170 | 225 | No hit | No description |
Pfam | PF00046 | 8.5E-13 | 170 | 222 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 199 | 222 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.9E-26 | 224 | 267 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.6E-11 | 224 | 258 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MELGLSLGEP AVPDAGRAAP ELGLGLGVGA AGSGHEDGMG SSRAAGNGAG ARWWAAPVDE 60 PEPAVRLSLV SSLGLQWPAA SDGGRSSEAP ARGFDVNRAP SAAASALAAL EDDDEDPAAG 120 ALSSSPNDSG GSFPLDLGRR AAHADGATAR AGGERSSSRA SDEDEGASAR KKLRLSKEQS 180 AFLEESFKEH STLNPKAALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCEAL 240 TEENRRLHKE LAELRALKTA PPFYMHLPAT TLSMCPSCER VASNPGSAPT SAPASSTPPA 300 TATTNNNNSG AAAAAAPARG EHRPSSFAAL FAATRSFPLA PHRRPPAPAS NCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 224 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G176400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241196 | 0.0 | AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702116.1 | 0.0 | homeobox-leucine zipper protein HOX27 | ||||
Swissprot | Q6YPD0 | 1e-125 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A368RMU6 | 0.0 | A0A368RMU6_SETIT; Uncharacterized protein | ||||
STRING | Si014954m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-66 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G176400.2.p |
Entrez Gene | 101754251 |