PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G160100.1.p
Common NameLOC101776398, SETIT_014183mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 291aa    MW: 30869.7 Da    PI: 9.4539
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G160100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+ lv +v+  G+g+W++++   g+ R+ k+c++rw +yl
  Seita.6G160100.1.p 14 KGPWTPEEDLVLVSYVQDNGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding48.52e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ +E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Seita.6G160100.1.p  67 RGNFSVQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.882961IPR017930Myb domain
SuperFamilySSF466893.15E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
CDDcd001674.73E-101661No hitNo description
PROSITE profilePS5129424.262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2465116IPR009057Homeodomain-like
SMARTSM007177.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
CDDcd001679.78E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRPPCCEKT GVKKGPWTPE EDLVLVSYVQ DNGPGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF SVQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLSKAG  120
AAEAKSGRSA ADKGQWERRL QTDIHTARQA LRDALSLDPM LPPAKTEPLP LPPAPAPASQ  180
AAYASSTQNI ARLLEDFMRP RAGSGSGGKA SSGSRSSASA VSGGEGAASA SHSGSGTTRT  240
PEGSTGTSKA EDAGPAPPFS MLESWLLDDG MGHGDAGLMG VPLSDPCQFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-24141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-241211625128MYB TRANSFORMING PROTEIN
1mse_C2e-24141164105C-Myb DNA-Binding Domain
1msf_C2e-24141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G160100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8377781e-119CT837778.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973531.10.0myb-related protein 306
SwissprotP813923e-99MYB06_ANTMA; Myb-related protein 306
TrEMBLK3YIW40.0K3YIW4_SETIT; Uncharacterized protein
STRINGSi014183m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.22e-90myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]