PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G159900.1.p | ||||||||
Common Name | LOC101775584, SETIT_015514mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 382aa MW: 42806.2 Da PI: 8.058 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.4 | 1.2e-52 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l+pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++ Seita.6G159900.1.p 16 LMPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWKATGTDRP 105 689***************************.89***************9888999************************************ PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkk+Lvfykgra +g ktdW+mhe+rl Seita.6G159900.1.p 106 IYSSeGTKCIGLKKSLVFYKGRAARGMKTDWMMHEFRL 143 ***956667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-57 | 15 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.1 | 16 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-26 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEARNDINMD RSDEILMPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKYDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSSE GTKCIGLKKS 120 LVFYKGRAAR GMKTDWMMHE FRLPSLNDPS LPKRPIDKTI PLNDSWTICR IFKKTSSMAQ 180 RALSHTWGPP LPGATEAEMF AAFQSVQASE FALESSSCSL QAAQPAPASQ FTSRHGLQGH 240 QQNKVNNPSL DGSSCKLINF NCSQSLEPQN FPISSFPFEV QTSQKTTAAA PMFFSTQPDH 300 QLSGFVVDSS ADVNGGIGSR SQDSSTRKPG NGFSMNSSDW EAVGRINFPF DLGADSAEDW 360 RCNIPWESFL SPAAVQTELP H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-52 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-52 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-52 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-52 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-52 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-52 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-52 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-52 | 16 | 177 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-52 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-52 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G159900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822140.1 | 0.0 | protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 2e-98 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | K3YMN3 | 0.0 | K3YMN3_SETIT; Uncharacterized protein | ||||
STRING | Si015514m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-100 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G159900.1.p |
Entrez Gene | 101775584 |
Publications ? help Back to Top | |||
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