PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G156800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26756.1 Da    PI: 9.368
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G156800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.31.3e-25959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        kri+n + rqvtfskRr g++KKA+EL +LCdaev +i+fsstg+ y+++s
  Seita.6G156800.1.p  9 KRIDNATSRQVTFSKRRSGLFKKAKELAILCDAEVGLIVFSSTGRQYDFAS 59
                        79**********************************************986 PP
2K-box79.67.7e-2781170998
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          ++a+a+ +q+e+  L+++++n q+ +R+llG++L+ L++k+Lq+Le++Le slk+iR kK++l+++qi+el +k   +++en +L +k+
  Seita.6G156800.1.p  81 SASAEAKFWQREAGSLRQQLHNVQEHHRQLLGQQLSGLDVKDLQNLENKLEMSLKNIRMKKDQLMIDQIQELNRKGSLMHRENIELYNKV 170
                         578899********************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-32290IPR002100Transcription factor, MADS-box
CDDcd002659.55E-44278No hitNo description
PRINTSPR004046.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014864.1E-2683170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.70186176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIEIKR IDNATSRQVT FSKRRSGLFK KAKELAILCD AEVGLIVFSS TGRQYDFAST  60
SMKSVIERYS EAKEDHHQTL SASAEAKFWQ REAGSLRQQL HNVQEHHRQL LGQQLSGLDV  120
KDLQNLENKL EMSLKNIRMK KDQLMIDQIQ ELNRKGSLMH RENIELYNKV NLAHQENTEL  180
RRKVYGHGVD EHPSSSTVRH SIQITENEDV HVNLELSQPQ SVQRDKSETP STG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22176176MEF2C
5f28_B2e-22176176MEF2C
5f28_C2e-22176176MEF2C
5f28_D2e-22176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G156800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5413854e-57JX541385.1 Paspalum vaginatum clone StvSingle_HKZDOCN02EGLEG microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973502.11e-173MADS-box transcription factor 23 isoform X1
SwissprotQ6EP492e-97MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A368RM711e-171A0A368RM71_SETIT; Uncharacterized protein
STRINGPavir.Fb01587.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.18e-95AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]