PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G148300.1.p | ||||||||
Common Name | SETIT_015542mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 312aa MW: 34730.9 Da PI: 5.5575 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.4 | 1.9e-14 | 141 | 186 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+WT eE+ +++++ +++G g+Wk I r + ++Rt+ q+ s+ qky Seita.6G148300.1.p 141 GSWTIEEHRQFLCGLHEYGRGNWKNICRDFVTTRTPAQVSSHAQKY 186 79*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-9 | 134 | 187 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.56 | 135 | 191 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-10 | 139 | 189 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.01E-14 | 139 | 191 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-12 | 141 | 186 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 5.1E-13 | 142 | 189 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.65E-9 | 142 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MDPKFNGEWS ASDIRMVKSL IASHDANNNY ANDTNKTHNA IVNELQAWFP QKEKSQVIEL 60 YVDLLVEMML QAQSGNHSVV AISNLVNDNS GIPMEDPPMK NMDMLLASYL KDKTPEAMGM 120 VEEAPQRQVI VPRQKRQHNE GSWTIEEHRQ FLCGLHEYGR GNWKNICRDF VTTRTPAQVS 180 SHAQKYFIKM KCTSEKKRYS INDVGLYNAE QWAHNNSFSQ DPPAFGDAHN PNCYGSSNQI 240 VPMNNVAPVW SPFLYSAGQA SSSQVSTLAG QQLGASSSPA LALEGVGSQM ALTGNQQGDF 300 LPEQWMDIDN M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G148300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959144.1 | 1e-148 | transcription factor SRM1 | ||||
TrEMBL | A0A368RM19 | 0.0 | A0A368RM19_SETIT; Uncharacterized protein | ||||
STRING | Si015542m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 4e-23 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G148300.1.p |