PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G138500.1.p | ||||||||
Common Name | LOC101782058, SETIT_015783mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 431aa MW: 45651.2 Da PI: 4.5344 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.8 | 1.7e-38 | 83 | 181 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+lk+l++e dam +l+y++++ra dPv G++++il+l++qle + Seita.6G138500.1.p 83 ACAACKYQRRKCNQDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLKRLRPELCADAMGTLIYQSDMRATDPVGGCYRLILSLERQLEIET 173 7****************************************************************************************** PP DUF260 92 aelallke 99 ael+++ + Seita.6G138500.1.p 174 AELSAVLH 181 **998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.999 | 82 | 183 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-36 | 83 | 179 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MTSSAVPAAA ASSHQQAPRL HITTTTTGTG TSTITTSPSS HHHHSPSSAR SAPHSASSSP 60 RGSSSNSGTA AGGGGGSGST NQACAACKYQ RRKCNQDCPL APYFPADQQR RFLNAHRLFG 120 VSNILKTLKR LRPELCADAM GTLIYQSDMR ATDPVGGCYR LILSLERQLE IETAELSAVL 180 HNLALYRQAA AAAAAAIPPQ EAGGAMAADL DVTSSNQPLL LDAEQEVVDA LYANHEADTA 240 AILQTDGVHR HDHGDDSPQD HGEQQQQQQQ LFDYFYYEAT ASDDASSKPT IDINLDNMQQ 300 FDFDDTCAAE KIDLAPAGPE EMGQPQHLDV NCQIDHKDYQ IKAAALVDAF DMRQELQPAV 360 DVNADVVVKA VDMNAGIGGV GIKAVDVNAN VDVNVDLQEE DPNNIAAGDE AVQMAAESSH 420 CRLGLGFSSF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-21 | 84 | 186 | 12 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-21 | 84 | 186 | 12 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G138500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973381.1 | 0.0 | uncharacterized protein LOC101782058 | ||||
TrEMBL | K3YNE2 | 0.0 | K3YNE2_SETIT; Uncharacterized protein | ||||
STRING | Si015783m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 6e-38 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G138500.1.p |
Entrez Gene | 101782058 |