PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G132300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | CPP | ||||||||
Protein Properties | Length: 420aa MW: 46621 Da PI: 8.8903 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 40.3 | 6.2e-13 | 213 | 249 | 4 | 41 |
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++C+Ck+skClk+YCeCfaag++C+ +C++C N+ + Seita.6G132300.1.p 213 RNCKCKNSKCLKRYCECFAAGRYCKG-FNCTNCYNNGS 249 78***********************9.9*******976 PP | |||||||
2 | TCR | 51.2 | 2.4e-16 | 297 | 337 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+++gCnC+ks+ClkkYCeCf++++ Cs++CkC dCkN e+ Seita.6G132300.1.p 297 KHTRGCNCRKSECLKKYCECFQSNVLCSDNCKCMDCKNYES 337 5899**********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.7E-7 | 210 | 250 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 31.22 | 211 | 337 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.1E-9 | 213 | 247 | IPR005172 | CRC domain |
SMART | SM01114 | 2.0E-18 | 297 | 338 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-12 | 300 | 335 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MDKPPELSLG SMHLDIASAF YAGKPEIATT AAALSQALGQ AQTCPRLQPS LQSLQSSLLL 60 WPPVIWSTWA AVKHPMPLPH LPPAKKLKLL QTSSVLTPAL PDTEALPVVE LPLPKLPVRH 120 PLPKLQVRRP LPKLQMHNPL QQASLVLEKE SLKQEMPVTP LTSATSVNLW NASKELNIFQ 180 ITSCLSHAEC FWRYLPKCVC EYLNHNLTPA GIRNCKCKNS KCLKRYCECF AAGRYCKGFN 240 CTNCYNNGSH DNARARQDAI DAVLERRPMA FMPKVENRSC SKQSSEGKEA EGPHVGKHTR 300 GCNCRKSECL KKYCECFQSN VLCSDNCKCM DCKNYESNEE RKAIRAQKHT VFVQNKQNYA 360 SSGILQPSSV LPRTTKNDSV TSMAASGIHH PTSNNGSSQI ILFKHTFQCC QLSCFLLSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-24 | 215 | 344 | 14 | 130 | Protein lin-54 homolog |
5fd3_B | 2e-24 | 215 | 344 | 14 | 130 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G132300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368RLD2 | 0.0 | A0A368RLD2_SETIT; Uncharacterized protein | ||||
STRING | Si014947m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13846 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 2e-49 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G132300.1.p |