PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G103400.1.p
Common NameLOC101774371, SETIT_013488mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 574aa    MW: 61769.1 Da    PI: 6.408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G103400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-29255311259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg+nWrKYGqK+vk+se++rsYYrCt +gC++kkkve++  d++vvei+Y+g Hnh+
  Seita.6G103400.1.p 255 ADGFNWRKYGQKQVKSSENSRSYYRCTNSGCSAKKKVEHCP-DGRVVEIIYRGAHNHD 311
                         7****************************************.***************7 PP
2WRKY100.51e-31423480259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  Seita.6G103400.1.p 423 SDGYRWRKYGQKIVKGNPNPRSYYRCTHGGCPVRKHVEKAPDDVNNIVVTYEGKHNHD 480
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.779249313IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-27250313IPR003657WRKY domain
SuperFamilySSF1182901.7E-23251313IPR003657WRKY domain
SMARTSM007745.7E-33254312IPR003657WRKY domain
PfamPF031066.3E-23256311IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-31416482IPR003657WRKY domain
PROSITE profilePS5081132.948417482IPR003657WRKY domain
SuperFamilySSF1182902.35E-27417482IPR003657WRKY domain
SMARTSM007741.2E-35422481IPR003657WRKY domain
PfamPF031061.5E-25424480IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MADSDPEPAP APAPADDKCP APAAAVEVEE ARPPPPEGTA EVKLPSQEAS AAEVETRPPP  60
EAPGATPAED SEKEAEAKPK EGKKGEKEMG DETKEKRLEE DKGKGAKQDK EETKEKEKVD  120
AKGKVLAVVK VEGTEKEVKA TRRPAGASAE TPILAVPVVA VPCFIAPPGF AGQFAMTHQA  180
ALASVTAHAQ MHMQSPTTSG CSEAPSSPFY ITPRSIVPLQ QSPSVAEGNV CRQLADKPFS  240
SEPKSPHHAV VNMVADGFNW RKYGQKQVKS SENSRSYYRC TNSGCSAKKK VEHCPDGRVV  300
EIIYRGAHNH DPPPKTRFAK EKVTPIGVPS GGETLRLVNT EILESSTPTT YKLDHSSVSE  360
TSEQQLFCSS DCEGDAGNKS EDEHPSAEPL PKRRVIETTA PNLTPVLRTV REQKIIVQAG  420
KMSDGYRWRK YGQKIVKGNP NPRSYYRCTH GGCPVRKHVE KAPDDVNNIV VTYEGKHNHD  480
EPFRSNSIPV SAISQPVAAI EQPSTSITTA DERPPTITQK DANGVSDKET TLEFGGEKAL  540
ESAQTLLSIK TNSDDMKNSV LKETSAAVPV QNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-252514821477Probable WRKY transcription factor 4
2lex_A2e-252514821477Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G103400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973142.10.0probable WRKY transcription factor 32
TrEMBLK3YGX00.0K3YGX0_SETIT; Uncharacterized protein
STRINGSi013488m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.17e-68WRKY DNA-binding protein 4