PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G075700.1.p | ||||||||
Common Name | SETIT_014280mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LSD | ||||||||
Protein Properties | Length: 169aa MW: 17842.4 Da PI: 8.946 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 24.5 | 4.7e-08 | 16 | 39 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC+ +L Y rGA+ V+C+ C+t Seita.6G075700.1.p 16 CSGCKRVLEYRRGATGVCCPGCNT 39 ***********************9 PP | |||||||
2 | zf-LSD1 | 23.7 | 8.2e-08 | 55 | 77 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 CggC t+L Y rGA ++RC+ C Seita.6G075700.1.p 55 CGGCFTMLVYNRGAANIRCPHCG 77 **********************7 PP | |||||||
3 | zf-LSD1 | 25.6 | 2.1e-08 | 93 | 117 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GA+ V C+ C V Seita.6G075700.1.p 93 CGHCRTTLAYPPGASTVGCPTCRCV 117 **********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.9E-8 | 13 | 41 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.7E-6 | 16 | 39 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.8E-9 | 53 | 80 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.5E-9 | 55 | 77 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.0E-7 | 90 | 119 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.4E-8 | 93 | 117 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MHRHLAAKCM QDQLICSGCK RVLEYRRGAT GVCCPGCNTF TAANPSGSEM SELVCGGCFT 60 MLVYNRGAAN IRCPHCGRVN STRSANQIGH LSCGHCRTTL AYPPGASTVG CPTCRCVNPV 120 RNNNSGGSAR PAQSDARPQT VLVENPKTLD EKGKLVSNVA VGVTSWKR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G075700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972942.1 | 1e-113 | protein LOL4 isoform X2 | ||||
Swissprot | Q84UR0 | 6e-78 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A368RJH2 | 1e-120 | A0A368RJH2_SETIT; Uncharacterized protein | ||||
STRING | Si014280m | 1e-111 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-39 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G075700.1.p |
Publications ? help Back to Top | |||
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