PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G063100.1.p | ||||||||
Common Name | LOC101753432, SETIT_014031mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 339aa MW: 35952.7 Da PI: 10.0582 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 103 | 147 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky Seita.6G063100.1.p 103 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 147 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.968 | 96 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-17 | 97 | 152 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-18 | 99 | 151 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-11 | 100 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-12 | 103 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.78E-10 | 103 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-12 | 103 | 146 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MPQDSRPAGM RLFGVTIAPA PPPAPEADPP DRDPSPNPPV AVREDVMRKC KSMGNLAALG 60 AGADAVGAGA DGVGAGDGYL SDGGLMQSSG KRRRAQERKK AVPWTEEEHR TFLAGLEKLG 120 KGDWRGIAKN FVTTRTPTQV ASHAQKYFLR QTNPNKKKRR SSLFDMMPSE LSPVPNCPIL 180 PSSMAKVHDV VAMTRQLQNS NLEGGSSSNA ANIAPQVGRD LPPVPSFRAT NIDSSVSKLN 240 HMEPLWRTPY PFRPIPRAPD GTSSSTSIAA NIASPDAKAN PTACTSTFLS PRSDTSSVPP 300 KADPPAEMKD LELTVATPSQ QNMTNMSSQN AVGVIQVI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 159 | KKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G063100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037520 | 0.0 | BT037520.1 Zea mays full-length cDNA clone ZM_BFb0175P21 mRNA, complete cds. | |||
GenBank | EU972688 | 0.0 | EU972688.1 Zea mays clone 385981 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972854.1 | 0.0 | uncharacterized protein LOC101753432 isoform X1 | ||||
TrEMBL | K3YIG2 | 0.0 | K3YIG2_SETIT; Uncharacterized protein | ||||
STRING | Si014031m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5858 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 2e-39 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G063100.1.p |
Entrez Gene | 101753432 |