PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G055600.1.p | ||||||||
Common Name | LOC101777088, SETIT_014362mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 243aa MW: 26413.1 Da PI: 5.1464 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 84.1 | 1.2e-26 | 57 | 143 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+kvltpsdv+k++rlv+pk++ae++ +++l +ed+ g W+++++y+++s++yv+tkGW++Fv+ +L +gD+v F+++ Seita.6G055600.1.p 57 FDKVLTPSDVGKLNRLVVPKQHAERFFPAAGAGTQLCFEDRGGVPWRFRYSYWGSSQSYVMTKGWSRFVRGARLAAGDTVSFSRVAA 143 89************************555567789***********************************************97755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-37 | 48 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-28 | 54 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.04E-24 | 55 | 145 | No hit | No description |
PROSITE profile | PS50863 | 13.281 | 57 | 157 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-24 | 57 | 146 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-19 | 57 | 154 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MYMDLSLGTL VEDTQEVQEE HQEEEQEDDL YQQRALGQDL QHGGGEPSHA TEREHMFDKV 60 LTPSDVGKLN RLVVPKQHAE RFFPAAGAGT QLCFEDRGGV PWRFRYSYWG SSQSYVMTKG 120 WSRFVRGARL AAGDTVSFSR VAAGGGSRYF IDYRHCQRRR HDISFGDAAA MPAAWPTVTR 180 RGGATVAVDT ALVPVAGHGI EVGPTAGARS FRLFGFNVEC SGDDGAAASA ASAELEYVDG 240 DS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-45 | 52 | 154 | 3 | 111 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-45 | 52 | 154 | 3 | 111 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G055600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728410 | 1e-108 | KJ728410.1 Zea mays clone pUT6715 ABI3VP1 transcription factor (ABI23) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974419.1 | 1e-179 | putative B3 domain-containing protein Os08g0157700 | ||||
Swissprot | Q7EZD5 | 1e-73 | Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700 | ||||
TrEMBL | K3YJE3 | 1e-178 | K3YJE3_SETIT; Uncharacterized protein | ||||
STRING | Si014362m | 1e-179 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14164 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 5e-47 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G055600.1.p |
Entrez Gene | 101777088 |