PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G055400.1.p
Common NameLOC101763561, SETIT_013369mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 672aa    MW: 74363 Da    PI: 4.4709
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G055400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.9e-5291421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd
  Seita.6G055400.1.p   9 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKD 99 
                         699************************9999****************96446677888********************************* PP

                 NAM  90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + ++sk    k++++g+kktLvf++grapkge+t W+mheyr 
  Seita.6G055400.1.p 100 RIIKSKgdkrKQHVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                         *****988767777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-593163IPR003441NAC domain
PROSITE profilePS5100557.289163IPR003441NAC domain
PfamPF023651.4E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQINSEVE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR IIKSKGDKRK QHVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFDSG EQGGYVLYRL FRKQEEKPER ASPEEVDRSG  180
YSPTPSRSSP DNIEANEEAN TPLNRESPES GLHESPIELP NPVETHAMPI TRWLAGRNDN  240
LVPTAADVSH MPFNGHADVP EVNPSAGASA QLINPQNGND NLTNFAPDIA PNLQHGNAFV  300
PDLQEIAFGF DGNMNPPDAL DVFLNQALVD PDEHSSTTSR VQYDSDIPTE FENNGVAQGE  360
DDQSWWANLD FLSDEPNPLN SAYENTPLLP YDANDQDVLS VDSGADSLHE LFNNMEDSNA  420
RRAGMNIEYG LQGTGISLMP RQLQSSAQPN YVLTNQGTAS RRLRLHLPAD FESAESITRD  480
ESEDEVSCVV TADRDVVSDG DEAESTGIVI RSRPAPSSSS ESSFTQQGTT VRRLRLQSDL  540
KTGPCPSTDD TSSCIINETE SHHQPEKSEI AEDASKNFAG SVDDLSVNCD DNEQKTMPQH  600
VAEMAVPEAK PVPRLRKASE KSDKDTIKQE SGLESLVRAP VQKGGFQSYT AWLVLSVVLL  660
LLLSVGVYGW M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-46816416166NO APICAL MERISTEM PROTEIN
1ut4_B3e-46816416166NO APICAL MERISTEM PROTEIN
1ut7_A3e-46816416166NO APICAL MERISTEM PROTEIN
1ut7_B3e-46816416166NO APICAL MERISTEM PROTEIN
3swm_A3e-46816419169NAC domain-containing protein 19
3swm_B3e-46816419169NAC domain-containing protein 19
3swm_C3e-46816419169NAC domain-containing protein 19
3swm_D3e-46816419169NAC domain-containing protein 19
3swp_A3e-46816419169NAC domain-containing protein 19
3swp_B3e-46816419169NAC domain-containing protein 19
3swp_C3e-46816419169NAC domain-containing protein 19
3swp_D3e-46816419169NAC domain-containing protein 19
4dul_A3e-46816416166NAC domain-containing protein 19
4dul_B3e-46816416166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G055400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972796.10.0protein NTM1-like 9
TrEMBLK3YGK10.0K3YGK1_SETIT; Uncharacterized protein
STRINGSi013369m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.15e-74NAC 014