PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.6G053400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 332aa MW: 34842.2 Da PI: 7.3334 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.7 | 2.2e-32 | 162 | 215 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Seita.6G053400.2.p 162 PRMRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYRT 215 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-29 | 159 | 216 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.06E-16 | 160 | 216 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-24 | 162 | 215 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.3E-7 | 163 | 214 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MELFPSQPDL SLQIGLPTSA TPHDHHHHAA AAALNARFFA AAGGGGNGVG NPAAMAPSLQ 60 LPMPVPLPLP VQLPMPPSAA AGAAGLYYHP DASMLRPIRG VPLYQHPHTH AVPPTFPPHA 120 AAAGPCFCEP CHVAAGAWRR AGCGAGARVA GFPPAKRAAR APRMRWTSTL HARFVHAVEL 180 LGGHDRATPK SVLELMDVKD LTLAHVKSHL QMYRTVKNTE RPAASSDQAD GFENGSAGEI 240 CDDNSLDLHG YGGGGSGRPE SAAAAARHGR EDWTGFPSES NTGSMHSLKE QMQSKSLEIL 300 SDMNSCVSET TSSTSELNLE FTLGRPQNRP N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 163 | 217 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.6G053400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU957008 | 0.0 | EU957008.1 Zea mays clone 1580405 KANADI-like transcription factor FEATHERED mRNA, complete cds. | |||
GenBank | KJ726819 | 0.0 | KJ726819.1 Zea mays clone pUT3358 G2-like transcription factor (GLK55) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702397.1 | 0.0 | probable transcription factor KAN2 isoform X2 | ||||
TrEMBL | A0A368RIG3 | 0.0 | A0A368RIG3_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G123308_P02 | 1e-148 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32240.1 | 5e-37 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.6G053400.2.p |