PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G046300.1.p | ||||||||
Common Name | SETIT_015237mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 19998 Da PI: 4.6546 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.2e-16 | 37 | 85 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a++ + ++ Seita.6G046300.1.p 37 EYLGVRRRP-WGRYAAEIRNPVT---KERHWLGTFDTAEEAAVAYDISAISIS 85 588******.**********654...5*******************9998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.2E-18 | 36 | 95 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-25 | 37 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.481 | 37 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-25 | 37 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-9 | 38 | 49 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-8 | 38 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.86E-24 | 38 | 94 | No hit | No description |
PRINTS | PR00367 | 8.3E-9 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSDAPAPVAH QVAVAAMGDH DLQPPQQRRR RSRASSEYLG VRRRPWGRYA AEIRNPVTKE 60 RHWLGTFDTA EEAAVAYDIS AISISGGAAA RTNFYYPCGA GLELGAAGAA TTLQQQQPSP 120 YGQVPIAPPP SPLSDGSGSG STVEDYECQL SAGEADDADD DESLTIAAIL QSFRHQNAPS 180 APSASLYLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-16 | 37 | 102 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G046300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241762 | 2e-77 | AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence. | |||
GenBank | AP005164 | 2e-77 | AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03. | |||
GenBank | AP014964 | 2e-77 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 2e-77 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683340.1 | 1e-123 | ethylene-responsive transcription factor LEP | ||||
Swissprot | Q3E703 | 5e-30 | ERF88_ARATH; Ethylene-responsive transcription factor ERF088 | ||||
TrEMBL | K3YLW1 | 1e-134 | K3YLW1_SETIT; Uncharacterized protein | ||||
STRING | Si015237m | 1e-135 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 2e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G046300.1.p |