PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G042600.2.p

Common Name

SETIT_013853mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 293aa MW: 30733.4 Da PI: 10.127

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G042600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.8	2.5e-05	185	222	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Seita.6G042600.2.p 185 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 222 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.992	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-12	183	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.56E-6	183	226	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-9	183	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MSSSRGDHQG HLGPRSPSSN NNGLMLQDPT HDPNHQFLSN LGLELLSSPT SPAGGFRSSS 60 LLRTLTEPSA AVAKPSSLGL FQQYHQQQTV NQAPSSIREA LQFTNNTPFW NPSTSFAAAA 120 EGAASLGTAG PPSGQSRPAN LAAKSAPEGA GDSGSIIAKK ANTDPTPLKK ARTGTPSPLP 180 TFKVRKEKLG DRITALQQLV SPFGKTDTAS VLHETIEYIK FLHEQVGSLS APYLKNRQQV 240 PHLKISRDGG EAAAAKGDLT GRGLCLVPIS STFAVASETP VDFWSPFGAA FR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G042600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972712.1	0.0	transcription factor bHLH112
Swissprot	Q94JL3	6e-42	BH112_ARATH; Transcription factor bHLH112
TrEMBL	A0A368RHW5	0.0	A0A368RHW5_SETIT; Uncharacterized protein
TrEMBL	A0A368RHX5	0.0	A0A368RHX5_SETIT; Uncharacterized protein
STRING	Si013853m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	2e-44	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.6G042600.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]