PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G034600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YC | ||||||||
Protein Properties | Length: 114aa MW: 13363.7 Da PI: 4.1959 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 47.9 | 3e-15 | 20 | 61 | 55 | 96 |
NF-YC 55 ileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 + eltlr+wlhaee krrtl+k d++aa++ t++fdfl + Seita.6G034600.1.p 20 LQELTLRAWLHAEEDKRRTLQKKDVTAALAGTEVFDFLGEAT 61 569***********************************8865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.64E-9 | 20 | 57 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.7E-10 | 20 | 59 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MLISLQHWQL QPHQQAPPLL QELTLRAWLH AEEDKRRTLQ KKDVTAALAG TEVFDFLGEA 60 TATVQEDDDP YRDYYWDDYS PPWSPDESPS PDLRNVTCDD PRYYTYIHDY YSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 41 | RRTLQKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G034600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321034.1 | 6e-27 | nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A368RHN1 | 5e-77 | A0A368RHN1_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Fa02054.1.p | 3e-48 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19726 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-12 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G034600.1.p |