PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G032700.1.p | ||||||||
Common Name | LOC101768833, SETIT_014180mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 32052.7 Da PI: 8.4598 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166 | 1.3e-51 | 11 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhP+d+elv +yL ++++g+ + +i +vd++k+ePwdLp+++ + kewyfF +rd+kyatg+r+nrat sgyWkatgkd++ Seita.6G032700.1.p 11 MPPGFRFHPRDDELVLDYLLHRLSGRVHGG-AAIVDVDLNKCEPWDLPEAACVGGKEWYFFNQRDRKYATGQRTNRATVSGYWKATGKDRA 100 79************************9888.78***************7666789************************************ PP NAM 92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrle 129 v++ +lvg++ktLvfy+grapkg+kt+Wvmhe+rle Seita.6G032700.1.p 101 VVAGaggeAAALVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 142 **9865544555***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-57 | 2 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.192 | 11 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-26 | 12 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MSSISMMEAR MPPGFRFHPR DDELVLDYLL HRLSGRVHGG AAIVDVDLNK CEPWDLPEAA 60 CVGGKEWYFF NQRDRKYATG QRTNRATVSG YWKATGKDRA VVAGAGGEAA ALVGMRKTLV 120 FYRGRAPKGR KTEWVMHEFR LEPPAAPPPP PLVGRDLPAP ARYQRLKEDW VLCRVFYKSR 180 TTTPKLPPED AQDLTADLPL APLADTYTAF GAAPTVAEQV SCFSGLPALP FKRPVSLSDL 240 LAFDTSEKVS IGTVMLSSMS GNSSSSGLEL PPNCNWNQEN VLSQMWNPLG I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-44 | 6 | 185 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-44 | 6 | 185 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-44 | 6 | 185 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-44 | 6 | 185 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-44 | 6 | 185 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-44 | 6 | 185 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-44 | 6 | 185 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-44 | 6 | 185 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-44 | 6 | 185 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-44 | 6 | 185 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-44 | 6 | 185 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-44 | 6 | 185 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-44 | 6 | 185 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-44 | 6 | 185 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G032700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958128 | 1e-121 | EU958128.1 Zea mays clone 1674566 NAC domain-containing protein 21/22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972635.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-79 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | K3YIW1 | 0.0 | K3YIW1_SETIT; Uncharacterized protein | ||||
STRING | Si014180m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 7e-71 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G032700.1.p |
Entrez Gene | 101768833 |