PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G023800.1.p
Common NameLOC101776654, SETIT_014469mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 207aa    MW: 20908.6 Da    PI: 9.2217
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G023800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-203181256
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        + +GVr ++ +gr++AeIrd +     r +r++lg+f+t+e+Aa+a++aa++kl+g+
  Seita.6G023800.1.p 31 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEQAARAYDAAARKLRGP 81
                        679******.**********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.21E-193090No hitNo description
PfamPF008473.2E-143080IPR001471AP2/ERF domain
PROSITE profilePS5103223.2093188IPR001471AP2/ERF domain
SMARTSM003802.9E-303194IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-213189IPR016177DNA-binding domain
PRINTSPR003671.1E-93243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-293389IPR001471AP2/ERF domain
PRINTSPR003671.1E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAPKRSTSPA GSSSSGSGVF APAAAAEQQP RLRGVRKRPW GRYAAEIRDP VRKARVWLGT  60
FDTPEQAARA YDAAARKLRG PGATTNYPAA DAKGAASGNT VLSEDASSSS SSSRDSPLAV  120
TVAVAAAPPS LDLSLALPAT PSSCQMFLDP TMMVAGAPAL LQFLPPKSEE GQSLSCSSSS  180
SVVLDAAPAA GLGLDLNLAL PAQMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2028881172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G023800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972569.11e-142ethylene-responsive transcription factor 11
TrEMBLK3YJQ01e-140K3YJQ0_SETIT; Uncharacterized protein
STRINGSi014469m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-21ERF domain protein 11