PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G468100.1.p | ||||||||
Common Name | LOC101766124, SETIT_002653mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 27132.4 Da PI: 7.0107 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.7 | 3.4e-30 | 127 | 180 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Seita.5G468100.1.p 127 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 180 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.073 | 124 | 183 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-31 | 124 | 185 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-19 | 125 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-24 | 128 | 180 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-8 | 130 | 179 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGEEAVDDYQ LELLGDEERV MEWETGLPGA DELTPLSQPL VPPGLAAAFR IPPEPGRTLL 60 DVHRASAATV SRLRSSLGSG GGTFQPFLHP NQAAAGGGGG GSAAAAAGRG DEADSSAAAT 120 TANNSKRPRL VWTPQLHKRF VDVVAHLGIK NAVPKTIMQL MNVEGLTREN VASHLQKYRL 180 YVKRMQGLSN EGPSPSDHIF ASTPVPHSLV HEPQAQVPAP TPYFPMGVSV GYHHHHHQYH 240 HAGYPQAYHH ADK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-34 | 127 | 183 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00014 | PBM | Transfer from AT3G46640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G468100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB206578 | 6e-90 | AB206578.1 Oryza sativa Japonica Group OsPCL1 gene for putative transcription factor, complete cds. | |||
GenBank | AP003277 | 6e-90 | AP003277.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0518C01. | |||
GenBank | AP014957 | 6e-90 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 6e-90 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971425.1 | 0.0 | transcription factor PCL1 | ||||
Swissprot | Q94DH3 | 7e-92 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | K3XL80 | 0.0 | K3XL80_SETIT; Uncharacterized protein | ||||
STRING | Si002653m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59570.1 | 6e-58 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G468100.1.p |
Entrez Gene | 101766124 |