PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G456500.1.p

Common Name

LOC101754503, SETIT_001895mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

SRS

Protein Properties

Length: 358aa MW: 36417 Da PI: 7.8437

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G456500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220.6	3.4e-68	121	288	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsa 85 +sg+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq+ +a+ s++++ ++ +++ask++r ++q++ Seita.5G456500.1.p 121 GSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCSTHVKSTWVPAARRRERQHLAASGSASSSPATasaaavaSASASKKPRL--LSSQTT 209 57889********************************************99887765444333334667555556666665..589999 PP DUF702 86 lsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s+t++s+a+++++++t+s lP++v+++avf+cvrv+s++dge+e+aYq+ v+i+Gh+fkG+LydqG+++ Seita.5G456500.1.p 210 TSHTSTSNATTPRSFDTTSshqdasfrdsLPRQVRAPAVFKCVRVTSIEDGEDEYAYQAMVTINGHLFKGFLYDQGPDD 288 99**********99999******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.8E-63	124	287	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.0E-27	126	168	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-27	239	286	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MRQAAALNYG MADVGMVVVA PAASFHHTHH HHHHHEAAAA AAAAAGDPIF PLLSGGPCVL 60 DPDAAKSGSG APPGSAAIQF WQPQPQSPSS AAAANPNPSA SPFAYLKKPL PMLDTGAGSS 120 GSGATTCQDC GNQAKKDCGH NRCRTCCKSR GFDCSTHVKS TWVPAARRRE RQHLAASGSA 180 SSSPATASAA AVASASASKK PRLLSSQTTT SHTSTSNATT PRSFDTTSSH QDASFRDSLP 240 RQVRAPAVFK CVRVTSIEDG EDEYAYQAMV TINGHLFKGF LYDQGPDDGR HAATSNEDST 300 AGVPNISELH LGGASASGAG GTGGVREGGA SMGPTELYGG GGQHHILGGS SYGNTMN*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MRQAAALNYG MADVGMVVVA PAASFHHTHH HHHHHEAAAA AAAAAGDPIF PLLSGGPCVL  60
DPDAAKSGSG APPGSAAIQF WQPQPQSPSS AAAANPNPSA SPFAYLKKPL PMLDTGAGSS  120
GSGATTCQDC GNQAKKDCGH NRCRTCCKSR GFDCSTHVKS TWVPAARRRE RQHLAASGSA  180
SSSPATASAA AVASASASKK PRLLSSQTTT SHTSTSNATT PRSFDTTSSH QDASFRDSLP  240
RQVRAPAVFK CVRVTSIEDG EDEYAYQAMV TINGHLFKGF LYDQGPDDGR HAATSNEDST  300
AGVPNISELH LGGASASGAG GTGGVREGGA SMGPTELYGG GGQHHILGGS SYGNTMN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G456500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ858781	0.0	HQ858781.1 Zea mays clone UT1767 SRS transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971303.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	2e-63	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	K3XJD5	0.0	K3XJD5_SETIT; Uncharacterized protein
STRING	Si001895m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	9e-55	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Seita.5G456500.1.p
Entrez Gene	101754503

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]