PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G443300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 526aa MW: 55811.2 Da PI: 8.2312 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 111 | 133 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Seita.5G443300.1.p 111 FVCEICHKGFQRDQNLQLHRRGH 133 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00049 | 196 | 218 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cgk++ +s+ k H +++ Seita.5G443300.1.p 196 WKCERCGKRYAVHSDWKAHAKVC 218 58*****************9987 PP | |||||||
3 | zf-C2H2 | 12.3 | 0.00051 | 226 | 244 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++++H + Seita.5G443300.1.p 226 DCGTVFSRRDSFVTHRAFC 244 9**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.0E-5 | 110 | 133 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.2E-7 | 110 | 133 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 111 | 133 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.046 | 111 | 133 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 161 | 191 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 184 | 216 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.2E-7 | 191 | 216 | No hit | No description |
SMART | SM00355 | 150 | 196 | 216 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MQVSCLPSMS GVAARECAGS FSSVSSNTAR EVEEEFLQHQ QQQFHTKPLV LGSPPEMGND 60 DGDLQRVTGP SELPPPAPPT VKKKRSLPGT PDPSAEVMAL SPRTLMATNR FVCEICHKGF 120 QRDQNLQLHR RGHNLPWKLR QRGGGDGAAA GGGGPPRKRV YVCPEASCVH HNPARALGDL 180 TGIKKHYCRK HGEKKWKCER CGKRYAVHSD WKAHAKVCGT REYKCDCGTV FSRRDSFVTH 240 RAFCDALAQE NNKLAQPMNM ATVASALQGH AHHLALPPSH ADDLDAAAED DADADFNLDT 300 KSPQLRLQPT TMSDAANTPF LPPPLSMAGC MLSSLAAARP APSPSTTFFS GAKIGIDGPS 360 GPTGTMGFSP AGSASMSATA LLQKAAEMGA TTSGGYGAGF PTTVGFGPML GGPDRFPSPF 420 GPLKAAMEPP YDGQPLLGQT QLVGLDVGRL LLPMPPGQQL YGGHGGGVGS MTRAIGSLMH 480 GGQQQQQMVE HRRPDDLRVV DYLGVDEQRS FSGVSSFGPH IGPWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-33 | 192 | 259 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 2e-33 | 192 | 259 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G443300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066652 | 0.0 | BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971187.3 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9SCQ6 | 1e-105 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A368RFM8 | 0.0 | A0A368RFM8_SETIT; Uncharacterized protein | ||||
STRING | Si001316m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12554 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-103 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G443300.1.p |
Publications ? help Back to Top | |||
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