PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G437700.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 264aa MW: 28317.8 Da PI: 7.8767

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G437700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.4	1.2e-15	13	57	28	72
trihelix 28 kplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 p+W++vs+++r++g+er+p qC+++w nl+++ kki ++e+k + Seita.5G437700.1.p 13 RPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEGKAA 57 69***************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MERRGLQLPV RPRPKWAAVS AYCRRHGVER GPMQCRKRWG NLSWDLKKIV AWEGKAAAGD 60 GAGAALPPPQ QHESFWDMRG EQRRARQLPS SFDREVYDAL VCGTPAVAED AAAALPNFGD 120 GELEGVYRQP PIMVMPISAR KYEPPPASSE HECSGPVTES DKKAGAAASD KNSTSQHDGG 180 GGYKDSDATF VAGEAEGTTT ATPAATVSIG KQVIEALERG NRALEQQLEA QKCSWRADRE 240 QRAALLGALD RLAGAVGRIA DKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G437700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728031	1e-155	KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701700.2	0.0	trihelix transcription factor ASR3
TrEMBL	A0A368RFE6	0.0	A0A368RFE6_SETIT; Uncharacterized protein
STRING	Si004811m	1e-149	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13972	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-24	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Seita.5G437700.1.p