PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G433100.1.p
Common NameLOC101773398, SETIT_000282mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 858aa    MW: 96040.3 Da    PI: 8.2547
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G433100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.55.9e-54121282117
                CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                         ++e k+rwlk++e+++iL+n+e + ++++++++p+sgs++L+nr+++ryfr+DG++w+kkk+gkt++E+he+LKv++ve+l+cyYa++++n
  Seita.5G433100.1.p  12 QQEvKTRWLKPQEVLQILQNHELFMVSHKPPQKPPSGSWFLFNRRVLRYFRNDGFEWQKKKNGKTINEAHERLKVDNVEALNCYYARGDKN 102
                         56779************************************************************************************** PP

                CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                         ptfqrr+yw+L+ ++e+iv+vhy++v
  Seita.5G433100.1.p 103 PTFQRRIYWMLDPAYEHIVFVHYRDV 128
                         ***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.958134IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-6611129IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4815128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.5E-5311396IPR013783Immunoglobulin-like fold
CDDcd001021.00E-4311396No hitNo description
SuperFamilySSF812968.8E-12312394IPR014756Immunoglobulin E-set
CDDcd002047.16E-11507608No hitNo description
SuperFamilySSF484037.46E-13515610IPR020683Ankyrin repeat-containing domain
PfamPF136377.6E-10518570No hitNo description
Gene3DG3DSA:1.25.40.201.3E-13520614IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.159521581IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.725549581IPR002110Ankyrin repeat
SMARTSM002480.0018549578IPR002110Ankyrin repeat
SuperFamilySSF525403.72E-8672763IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.012712734IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.327713742IPR000048IQ motif, EF-hand binding site
PfamPF006120.014714733IPR000048IQ motif, EF-hand binding site
SMARTSM000150.011735757IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.67736764IPR000048IQ motif, EF-hand binding site
PfamPF006120.012737757IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MQQQGLDIHK LQQEVKTRWL KPQEVLQILQ NHELFMVSHK PPQKPPSGSW FLFNRRVLRY  60
FRNDGFEWQK KKNGKTINEA HERLKVDNVE ALNCYYARGD KNPTFQRRIY WMLDPAYEHI  120
VFVHYRDVLE GSISVSARND SPTSNQNGSA SRAEVHSSPG WTSESILPCP NSSSPGSAEE  180
VSSQTVTINN ETNSTSRFDL IQHKAALRKL EMQLSLEDKE DSYIIAEEVP TNNEHVVFPG  240
IQNGEPDSCG NLKDIFNIQE FSGHHTKETG THPYPSVLDV LKNSETWLED DQLVGILHPA  300
SMTPTENQWF HIHEVSPESA FSSEITKVIV LGDFLCNPSH SSWAMLFGDV KVPVEIIQQG  360
AIRCHTPCLN AGKVTMCLID GNGKPCSETR VFEFHEKPTK SMIDGNGKLC NDAQAIKAHQ  420
TPMKSNDELL LLLIYMQILF DGQGCDVFAK FSPQLPNPGC GFLVNQMDIM RKTYEQLDQE  480
KTVNSVMEVL LNDKFRQWLL SKCEQNSNGD HLLPKQYHGV IHTIAALGYD LALKPLLSSG  540
VPINYRDANG WTALHWAARF GREEMVVALL TADAAAGALS HPTSEDPAAK TPASIALAYG  600
FKGLSAFLSE AQLTTHLDSI ESKENGKCKG NASGGGIRNA VDRISDKSTH VHGGTDDQLA  660
LKDTLGAVRN AVQAAARIQA AYRVFSFKKK KEAALQNSCL SVHETVPVSH GMLEKAALSI  720
QKNFRCWKKR KEFLKLRKNV IKIQARVRAH QGRKKYRELL RSVGVLEKVM LRWHRKGVGL  780
RGFNSGAMPI DEEVEEDVAK VFRKLRVETA IDEAVSRVSC IIGSPKAMQQ YRRMLQRYQE  840
AKVNIQKDAS EVPASKG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G433100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971097.10.0calmodulin-binding transcription activator 4
TrEMBLK3XEG50.0K3XEG5_SETIT; Uncharacterized protein
STRINGSi000282m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-102Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains