PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G432700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 280aa MW: 29463.7 Da PI: 11.2156 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.8 | 3.9e-25 | 11 | 60 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k rqv fskRr g++KKA+EL LCdaeva+++fs+ gklyeyss Seita.5G432700.1.p 11 RIEDKASRQVRFSKRRSGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 60 8***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.987 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-32 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.37E-34 | 3 | 63 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-25 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-27 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-24 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-27 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-27 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MARRGRVELR RIEDKASRQV RFSKRRSGLF KKAFELALLC DAEVALLVFS PAGKLYEYSS 60 TSTAGGQARG DSLRLLPLRH VGSPPVEGGE VGAARRDGGR GLGRSRAACR RRGTGLVAEE 120 GKGDARPAAF ASSRSGAAAE GGETGRPAGG GRGGRGGSPG GRRVPLDDGW REGAVVRGRR 180 SGGGKTNSRE YRVVWVGIEG EGSQDAAASD LQTRLKEIAT WSEQNNANES DANELEKLEK 240 LLTNALRDTT TKKMLTKQNN GGAGGSTSSQ NSSGPRRQD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-17 | 4 | 61 | 3 | 60 | MEF2C |
5f28_B | 8e-17 | 4 | 61 | 3 | 60 | MEF2C |
5f28_C | 8e-17 | 4 | 61 | 3 | 60 | MEF2C |
5f28_D | 8e-17 | 4 | 61 | 3 | 60 | MEF2C |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G432700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038349 | 4e-73 | BT038349.1 Zea mays full-length cDNA clone ZM_BFb0228B20 mRNA, complete cds. | |||
GenBank | EU961677 | 4e-73 | EU961677.1 Zea mays clone 237541 MADS-box transcription factor 8 mRNA, complete cds. | |||
GenBank | KJ726934 | 4e-73 | KJ726934.1 Zea mays clone pUT3480 MADS transcription factor (MADS69) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368RFF6 | 0.0 | A0A368RFF6_SETIT; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 3e-25 | AGAMOUS-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G432700.1.p |