PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G432500.1.p
Common NameLOC101770983, SETIT_001804mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 388aa    MW: 40234.7 Da    PI: 9.2107
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G432500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.33.8e-4297173278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C vegC+adls+ ++yhrrhkvCe+hsk+pvv+v+g++qrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+
  Seita.5G432500.1.p  97 CSVEGCAADLSKGRDYHRRHKVCEAHSKTPVVTVAGQQQRFCQQCSRFHSLGEFDDTKRSCRKRLDGHNRRRRKPQP 173
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-3489158IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.89894171IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-3995176IPR004333Transcription factor, SBP-box
PfamPF031101.1E-3197170IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDWDAKMLPA WDLGTVVGPS SGGGGGVVAA AGGGGGGGGA LDLKLGGPTS WRAASTTTAA  60
AAPLPSPPAP PPRASSSSSA PAKRARPGQA QQAVPACSVE GCAADLSKGR DYHRRHKVCE  120
AHSKTPVVTV AGQQQRFCQQ CSRFHSLGEF DDTKRSCRKR LDGHNRRRRK PQPDPLNPGG  180
LFANHHGVTR FAAYPQLFAS SLADPKWPVV KTEADVFQDQ YYPAVHLNGA GSLFHGKDRK  240
HFPFLTNHHH GGESAGAFGS QPFTITTASS ESCSKQSNGN CALSLLSDNP TPAQTAMIPT  300
AQPLGATLQY GGAARVPDGG DVSLAGMSYV RLGDSKQASI LTTSTSHTTV ASPGPATQLQ  360
YYYHVSGGDQ GNSPDGAAIQ AIPYSSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-30971701184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153170KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G432500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560771e-110AK356077.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971091.10.0squamosa promoter-binding-like protein 2
SwissprotQ0JGI11e-121SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLK3XIT10.0K3XIT1_SETIT; Uncharacterized protein
STRINGSi001804m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-32SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]