PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G425300.1.p
Common NameSETIT_004289mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 463aa    MW: 49402.2 Da    PI: 4.9544
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G425300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.12e-1220521244
                        HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstg 44
                        tf  R++g+ KKA EL +LCd++va++ ++++g
  Seita.5G425300.1.p 20 TFNGRKEGLKKKARELAILCDVDVALVCAGPRG 52
                        999***************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.97152IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-16180IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-9161IPR002100Transcription factor, MADS-box
CDDcd002668.61E-18380No hitNo description
PfamPF003191.3E-111952IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MPRRKIHMGL IGKAGSLTRT FNGRKEGLKK KARELAILCD VDVALVCAGP RGGAPADVWE  60
FGAGVIDRYR RLPADKRAKH THLGYLNIEL GKEKARLAKE RQEGPKELAS PSAAVLKGVN  120
LEELLGSIDA ALLATAKRRK ALGMPDDGIA GGGQLRQAAV VPLEQGVRLA GDADLDDMEA  180
WVDELTWHGV EPHPLNASMT MQPASGGVQY TNGVEPRPLN ASMAQPASGA QYINSGSMCM  240
AGNQYLQQVG GNGENAHGQL LPWDAYQLHN TASCPDHGFF QYTGSNCSYS DMSGCPQMPV  300
PSNANAYNGW FDQAMWGADE SSCDAAVPVE YHHQPSLHIT GNPAYMPPEH SSMGTGGGDC  360
FTGVSPIGLD GSFMDASGHG YGTQCLADNF QCPDATQQFG VEPLHYLSDV AEGISYYDDL  420
ELFDHSSSGT VQFGSELSQS GVLDQDSGVQ KFWLMKEAAG FY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G425300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3XQV20.0K3XQV2_SETIT; Uncharacterized protein
STRINGSi004289m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-11AGAMOUS-like 24