PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G416200.1.p
Common NameSETIT_001123mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 353aa    MW: 37655 Da    PI: 7.5484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G416200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.3e-12286330654
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +++Er RR ri +++ +L++l+P+     +k  + +++L +Av+YIk+L
  Seita.5G416200.1.p 286 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDLAVDYIKEL 330
                         689*********************7....688***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799280330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-15283340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.05E-13284335No hitNo description
Gene3DG3DSA:4.10.280.104.0E-15285341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9286330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNRLHHHGVM PPPGTGQLAR YGSAPSSLLA AIADSVTRGG DAHPPPPPPV SRFYSGESSG  60
LTSCESSCRT DGGGGRPLER AYGGSGEIRV PPPPLQQQQS LAPPGPPHGL LRHSSSPAGL  120
LSRLMADPHG MAPTRGMGSY SQAGTDASMA HGHRQLSSQW SFSRQDLPQI SEMGMIPDIG  180
ESIVAGGCNS SSDGGGGAQS SSYLSRNFSV SSWDDTNSII FSSSSKKAKL DPADEMVTSF  240
SNIDSQFGLS KSSLEMPGMD DYLQLQQDSI ACRVRAKRGC ATHPRSIAER ERRTRISKRL  300
KKLQDLVPNM DKQTNTSDML DLAVDYIKEL KDEVEKLKHD QANCFCSGNQ NC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G416200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970931.10.0transcription factor bHLH128
TrEMBLA0A368REF80.0A0A368REF8_SETIT; Uncharacterized protein
TrEMBLK3XGV20.0K3XGV2_SETIT; Uncharacterized protein
STRINGSi001123m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-55bHLH family protein